History

0.0.7

  • Documentation

0.0.6

  • Switch to dictionaries and sets generated at construction time to speed up the lookup of symbols

0.0.5

  • Introduce unsymbols to cover cases where you would like to count observations from some a to an “invalid” b during marginal calculation, but still prevent the actual selection of the invalid b as a transition choice
  • Member list unsymbols keeps track of symbols who should have no weighting when counting observations or calculating marginals.
  • Allow a user to construct Hansel with an argument for the lookback order.
  • Alter get_spanning_support and get_counts_at to not count observations that originate from an ignored unsymbol and transition to a real symbol. This alteration makes things work even if you’ve been a silly and filled Hansel with more crummy data than usual, hooray.
  • Dramatically improve performance by using the correct ndarray indexing syntax [A, B, i, j] vs. [A][B][i][j]

0.0.4

  • Add some documentation.
  • Rename get_marginal_at to get_counts_at. As the function returns raw counts, not a marginal distribution, this is a less misleading name.
  • Don’t return the unused curr_branches_tot value from get_edge_weights_at.
  • Remove select_next_edge_at, we need not concern ourselves with problem specific end-user behaviour. We just provide an API to the pseudo-graph.

0.0.3

  • Add observations property for those who may find crumbs confusing or odd.
  • Remove domain specific language (“SNP”, “mallele”) in favour of “symbol”.
  • Require symbol list on constuction, prevent empty list with casting/template.
  • Ensure to catch an in-progress __new__ in __array_finalize__

0.0.2

  • Abstract BAM specific loading to gretel.
  • Rename reads attribute to slices (of bread)
  • Add sources property for those who may find slices confusing or bizarre.

0.0.1

  • Import repository from claw.